Index _ | A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | Q | R | S | T | U | V | W | X _ __getitem__() (FilterFormula method), [1] (FilterTreePlot method), [1] __repr__() (FilterFormula method), [1] (FilterTreePlot method), [1] __setitem__() (FilterFormula method), [1] (FilterTreePlot method), [1] _add_checkbox_generic() (FilterTreePlot method), [1] _add_fields_filter_menu_update() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.add_menu) _add_inplot_slider() (FilterTreePlot method), [1] _add_jones_arrows() (in module open_viewmin.nematic.jones) _add_jones_lambda_arrow() (in module open_viewmin.nematic.jones) _allowed_args_to_add_mesh (FilterFormula attribute), [1] _assign_keypress_events() (FilterTreePlotQt method), [1] _double_headed_arrow() (in module open_viewmin.nematic.jones) _get_basis_for_normal_plane() (in module open_viewmin.filter_tree_plot.filters.sample) _get_menu() (FilterTreePlotQt static method), [1] _inherit() (FilterFormula method), [1] _init_procedures_after_data_import() (FilterTreePlotQt method), [1] _interpret_color_or_scalars() (FilterFormula method), [1] _legacy_qmin_import() (NematicPlotNoQt method), [1], [2] _make_centroids_probe_filter_callable() (in module open_viewmin.filter_tree_plot.filters.sample) _make_circuit_probe_filter_callable() (in module open_viewmin.filter_tree_plot.filters.sample) _make_mesh_pts_sampler() (in module open_viewmin.filter_tree_plot.filters.sample) _pre_init() (NematicPlotNoQt method), [1], [2] _remove_bad_mesh_kwargs() (FilterFormula method), [1] _set_pyvista_plotter_properties() (FilterTreePlot method), [1] _unit_vector_along() (in module open_viewmin.filter_tree_plot.filters.sample) _update_actor_color_array() (FilterFormula method), [1] _update_actor_solid_color() (FilterFormula method), [1] _visibility_callback() (FilterTreePlot method), [1] A active_scalars_color_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) actor (ControlsSliderToolbar attribute) actor_control_toolbars (FilterTreePlotQt property), [1] actor_label_style() (in module open_viewmin.filter_tree_plot_Qt.settings_Qt) actor_name (ActorControlToolbar attribute) (SliceControlsToolBar attribute) actor_names() (FilterTreePlot method), [1] ActorControlToolbar (class in open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls) actors_color_cycle (FilterTreePlot attribute), [1] add_axes() (FilterTreePlot method), [1] add_calculation() (FilterFormula method), [1] add_centroids_probe_filter_formula() (in module open_viewmin.filter_tree_plot.filters.sample) add_checkbox() (ControlsCheckboxToolBar method) add_circuit_probe_filter_formula() (in module open_viewmin.filter_tree_plot.filters.sample) add_circuits_around_points() (NematicPlotNoQt method), [1], [2] add_close_button() (ControlsSliderToolbar method) (ControlsToolbar method) add_close_button_to_toolbar() (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.utilities_Qt) add_connected_sets() (in module open_viewmin.filter_tree_plot.filters.topology) add_Euler_characteristic_filter() (in module open_viewmin.filter_tree_plot.filters.topology) add_filter() (FilterFormula method), [1] add_filter_formula() (FilterTreePlot method), [1] (FilterTreePlotQt method), [1] add_filter_widget_clip_box() (in module open_viewmin.filter_tree_plot.widgets.box_widgets) add_filter_widget_clip_plane() (in module open_viewmin.filter_tree_plot.widgets.plane_widgets) add_filters_tree_top_item() (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.filters_tree_widgets) add_find_loops_filter() (in module open_viewmin.filter_tree_plot.filters.topology) add_glyphs() (FilterFormula method), [1] add_glyphs_to_mesh() (in module open_viewmin.filter_tree_plot.filters.glyphs) add_if_dict_lacks() (in module open_viewmin.filter_tree_plot.utilities.ovm_utilities) add_isosurface_qslider() (ActorControlToolbar method) add_isosurface_slider() (FilterTreePlot method), [1] add_item() (ControlsCheckboxToolBar method) add_jones_to_plotter() (in module open_viewmin.nematic.jones) add_jones_toolbar_to_plotter() (in module open_viewmin.nematic.jones) add_mesh_options_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.mesh_options) add_plane_widget() (FilterTreePlot method), [1] add_pontryagin_thom_widget() (in module open_viewmin.filter_tree_plot.widgets.plane_widgets) add_property_toggle_checkbox() (ActorControlToolbar method) add_qslider() (ActorControlToolbar method) add_qslider_type() (ActorControlToolbar method) add_refresh_button() (ControlsToolbar method) add_root_mesh() (FilterTreePlot method), [1] add_row() (FormDialog method) add_slice() (in module open_viewmin.filter_tree_plot.widgets.plane_widgets) add_slice_aux() (in module open_viewmin.filter_tree_plot.widgets.plane_widgets) add_slice_widget_to_slice_mesh() (in module open_viewmin.filter_tree_plot.widgets.plane_widgets) add_slice_with_controls() (FilterTreePlotQt method), [1] add_streamlines_to_surface() (in module open_viewmin.filter_tree_plot.filters.streamlines) add_surface_streamlines_aux() (in module open_viewmin.filter_tree_plot.filters.streamlines) add_tensor_ellipsoids() (in module open_viewmin.filter_tree_plot.filters.glyphs) add_threshold_qslider() (ActorControlToolbar method) add_threshold_slider() (FilterTreePlot method), [1] add_threshold_text_controls() (ActorControlToolbar method) add_to_plotter() (ActorControlToolbar method) add_toolbar_to_controls_dock_widget() (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls) add_visibility_checkbox() (ActorControlToolbar method) (FilterTreePlot method), [1] add_visualization_options_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) add_viz_options_toolbar() (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls) add_widget_checkbox() (FilterTreePlot method), [1] add_widget_formula() (FilterTreePlot method), [1] (FilterTreePlotQt method), [1] alter_plane_widget() (in module open_viewmin.filter_tree_plot.widgets.plane_widgets) analyze_disclination_at_picked_point() (NematicPlotNoQt method), [1], [2] analyze_disclinations() (NematicPlotNoQt method), [1], [2] analyze_disclinations_at_points() (NematicPlotNoQt method), [1], [2] apolar_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) apply() (WidgetFormula method), [1] array_dims() (FilterTreePlot method), [1] array_dims_defined (FilterTreePlot attribute), [1] array_names (FilterFormula property), [1] assign_checkbox_to_actor_visibility() (ActorControlToolbar method) assign_file_data_to_frame() (FilterTreePlot method), [1] auto_setup() (NematicPlot method), [1], [2] (NematicPlotNoQt method), [1], [2] available_filters() (in module open_viewmin.filter_tree_plot.utilities.ovm_utilities) axes (FilterTreePlot attribute), [1] B buttonBox (FormDialog attribute) C calculate_and_show_defect_tangent() (NematicPlotNoQt method), [1], [2] calculate_chi_tensor() (NematicPlotNoQt method), [1], [2] calculate_D_tensor() (NematicPlotNoQt method), [1], [2] calculate_defect_tangent() (NematicPlotNoQt method), [1], [2] calculate_Euler_characteristic() (in module open_viewmin.filter_tree_plot.filters.topology) calculate_frank_energy_comps() (NematicPlotNoQt method), [1], [2] calculate_from_one_vector_field_and_one_scalar_field() (in module open_viewmin.filter_tree_plot.utilities.calculations) calculate_from_scalar_field() (in module open_viewmin.filter_tree_plot.utilities.calculations) calculate_from_tensor_field() (in module open_viewmin.filter_tree_plot.utilities.calculations) calculate_from_two_vector_fields() (in module open_viewmin.filter_tree_plot.utilities.calculations) calculate_from_vector_field() (in module open_viewmin.filter_tree_plot.utilities.calculations) calculate_menu (FilterTreePlotQt attribute), [1] calculate_n_gradients() (NematicPlotNoQt method), [1], [2] calculate_pontryagin_thom_surface() (in module open_viewmin.filter_tree_plot.filters.isosurfaces) calculate_rotation_vector_n() (NematicPlotNoQt method), [1], [2] calculate_tangent() (in module open_viewmin.filter_tree_plot.filters.glyphs) calculate_Westin_metrics() (NematicPlotNoQt method), [1], [2] callback (ColorDialogValid attribute) (WidgetFormula attribute), [1] check_existing_widget_configuration() (WidgetFormula method), [1] checkbox_toolbars (ControlsCheckboxToolBar attribute) checkboxes (ControlsCheckboxToolBar attribute) circuit_options_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) collapse() (SliceControlsToolBar method) color (WidgetFormula attribute), [1] color_button_enabled (ControlsCheckboxToolBar attribute) color_by_active_scalars() (FilterFormula method), [1] color_dialog_callback() (ColorDialogValid method) color_picker() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) color_to_qcolor() (ColorDialogValid static method) colorbar (FilterFormula attribute), [1] colorbar_titles() (FilterTreePlot method), [1] colorbars() (FilterTreePlot method), [1] ColorDialogValid (class in open_viewmin.filter_tree_plot_Qt.widgets_Qt.utilities_Qt) colormaps_list (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) configure (WidgetFormula attribute), [1] configure_box_widget() (in module open_viewmin.filter_tree_plot.widgets.box_widgets) configure_plane_widget() (in module open_viewmin.filter_tree_plot.widgets.plane_widgets) controls_dock_scroll_area (FilterTreePlotQt attribute), [1] controls_dock_widget (FilterTreePlotQt attribute), [1] controls_dock_window (FilterTreePlotQt attribute), [1] ControlsCheckboxToolBar (class in open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls) ControlsSliderToolbar (class in open_viewmin.filter_tree_plot_Qt.widgets_Qt.utilities_Qt) ControlsToolbar (class in open_viewmin.filter_tree_plot_Qt.widgets_Qt.utilities_Qt) copy_all_actors() (FilterTreePlot method), [1] copy_from_dict_recursively() (in module open_viewmin.filter_tree_plot.utilities.ovm_utilities) copy_scalar_bar_properties() (in module open_viewmin.filter_tree_plot.utilities.scalar_bars) create_filter_submenu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.filter_menu) create_filters_tree() (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.filters_tree_widgets) create_fullmesh() (FilterTreePlot method), [1] (NematicPlotNoQt method), [1], [2] create_orientation_button_callback() (SliceControlsToolBar method) creator (WidgetFormula attribute), [1] current_phi (SliceControlsToolBar attribute) current_theta (SliceControlsToolBar attribute) customize_controls_dock() (FilterTreePlotQt method), [1] D data (FilterTreePlot attribute), [1] data_stride (FilterTreePlot attribute), [1] default_mesh (FilterTreePlot property), [1] default_mesh_name (FilterTreePlot attribute), [1] default_slice_kwargs() (in module open_viewmin.filter_tree_plot.widgets.plane_widgets) descends (FilterFormula property), [1] di() (in module open_viewmin.filter_tree_plot.utilities.calculations) dij() (in module open_viewmin.filter_tree_plot.utilities.calculations) dims() (FilterTreePlot method), [1] director_data_import() (NematicPlotNoQt static method), [1], [2] disable_eye_dome_lighting() (FilterTreePlot method), [1] disable_shadows() (FilterTreePlot method), [1] do_after_update (FilterFormula attribute), [1] do_auto_setup (NematicPlotNoQt attribute), [1], [2] do_orbit() (FilterTreePlot method), [1] dock_widgets (FilterTreePlotQt attribute), [1] DropdownMenu (class in open_viewmin.filter_tree_plot_Qt.widgets_Qt.utilities_Qt) E einstein_sum() (in module open_viewmin.filter_tree_plot.utilities.calculations) Emory_theme (in module open_viewmin.filter_tree_plot.settings) enable_eye_dome_lighting() (FilterTreePlot method), [1] enable_pyvista_3_lights() (FilterTreePlotQt method), [1] enable_pyvista_lightkit() (FilterTreePlotQt method), [1] enable_shadows() (FilterTreePlot method), [1] enabled (WidgetFormula attribute), [1] expand() (SliceControlsToolBar method) expand_controls_button (SliceControlsToolBar attribute) expand_or_collapse_control_toolbar() (SliceControlsToolBar method) expanded (SliceControlsToolBar attribute) extent (QDoubleSpinBoxIgnoreLims property) external_update() (ControlsSliderToolbar method) extract_actors() (FilterTreePlot method), [1] F fast_import() (in module open_viewmin.filter_tree_plot.utilities.ovm_utilities) filenames (FilterTreePlot attribute), [1] (in module open_viewmin.open_viewmin) fill_filters_tree_recursively() (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.filters_tree_widgets) filter_formulas (FilterTreePlot attribute), [1] filter_kwargs (FilterFormula attribute), [1] filter_tree_roots() (FilterTreePlot method), [1] FilterFormula (class in open_viewmin) (class in open_viewmin.filter_tree_plot.filter_formulas) filters_tree_widget_items (FilterTreePlotQt attribute), [1] FilterTreePlot (class in open_viewmin) (class in open_viewmin.filter_tree_plot.filter_tree_plot) FilterTreePlotQt (class in open_viewmin) (class in open_viewmin.filter_tree_plot_Qt.filter_tree_plot_Qt) find_actor_for_scalar_bar() (FilterTreePlot method), [1] finish_setup_calculate_menu() (NematicPlot method), [1], [2] finished_setup (FilterTreePlotQt attribute), [1] first_frame() (FilterTreePlot method), [1] format_for_filters_tree() (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.filters_tree_widgets) format_label_for_filters_tree() (ActorControlToolbar method) FormDialog (class in open_viewmin.filter_tree_plot_Qt.widgets_Qt.utilities_Qt) formlayout (FormDialog attribute) frame_data (FilterTreePlot attribute), [1] frame_num (FilterTreePlot attribute), [1] (FilterTreePlotQt attribute), [1] fullmesh (FilterTreePlot property), [1] G geometric_objects (FilterTreePlot attribute), [1] get_actor() (FilterTreePlot method), [1] get_actor_name() (FilterTreePlot method), [1] get_arg_types() (in module open_viewmin.filter_tree_plot.utilities.ovm_utilities) get_auto_color() (FilterFormula method), [1] get_box_faces_info() (in module open_viewmin.filter_tree_plot.widgets.box_widgets) get_centroids() (FilterFormula method), [1] get_circuit() (in module open_viewmin.filter_tree_plot.filters.sample) get_circuits() (FilterFormula method), [1] get_connected_sets() (in module open_viewmin.filter_tree_plot.filters.topology) get_connected_subsets() (in module open_viewmin.filter_tree_plot.filters.topology) get_creator_func() (WidgetFormula method), [1] get_director_data_from_plotter() (in module open_viewmin.nematic.jones) get_eigenvec() (FilterFormula method), [1] get_filter_formula() (FilterTreePlot method), [1] get_grandparent_mesh_name() (FilterTreePlot method), [1] get_kwargs_and_defaults() (in module open_viewmin.filter_tree_plot.utilities.ovm_utilities) get_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.menu_utilities) get_menu_action() (in module open_viewmin.filter_tree_plot_Qt.menus.menu_utilities) get_menus() (in module open_viewmin.filter_tree_plot_Qt.menus.menu_utilities) get_mesh() (FilterTreePlot method), [1] get_mesh_name() (FilterTreePlot method), [1] get_min_max_scalars() (ActorControlToolbar method) get_points() (FilterTreePlot method), [1] get_quarter_wave_plate_jones() (in module open_viewmin.nematic.jones) get_widget() (FilterTreePlot method), [1] get_widget_formula() (FilterTreePlot method), [1] give_colorbar_unique_title() (FilterFormula method), [1] glyph_settings_choice_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) H handle_filter_or_numpy() (FilterFormula static method), [1] has_actor (FilterFormula attribute), [1] hex_to_rgb() (in module open_viewmin.filter_tree_plot.utilities.ovm_utilities) hide() (FilterFormula method), [1] hide_all_actors() (FilterTreePlot method), [1] hide_all_meshes() (FilterTreePlot method), [1] hide_orbit() (FilterTreePlot method), [1] high_val (QDoubleSpinBoxIgnoreLims attribute) Hopkins_theme (in module open_viewmin.filter_tree_plot.settings) horizontal (ControlsToolbar attribute) I icon_size (ControlsToolbar attribute) identity_callable() (FilterFormula static method), [1] in_place (FilterFormula attribute), [1] init_state_callback (ControlsCheckboxToolBar attribute) init_val (ControlsSliderToolbar attribute) initial_color (ColorDialogValid attribute) initialize_plotter() (FilterTreePlot method), [1] (FilterTreePlotQt method), [1] input_boxes (SliceControlsToolBar attribute) is_enabled_eye_dome_lighting (FilterTreePlot attribute), [1] is_filter_tree_root (FilterFormula property), [1] is_glyphs (FilterFormula property), [1] isosurface_slider_callback() (ActorControlToolbar method) items (ControlsCheckboxToolBar attribute) items_dict_reference (ControlsCheckboxToolBar attribute) J jones_light_propagation_through_sample() (in module open_viewmin.nematic.jones) jones_matrices_multiple_wavelengths() (in module open_viewmin.nematic.jones) jones_matrix() (in module open_viewmin.nematic.jones) L label (ControlsToolbar attribute) label_toolbar (ControlsToolbar attribute) last_frame() (FilterTreePlot method), [1] layout (FormDialog attribute) levi_civita (in module open_viewmin.filter_tree_plot.utilities.calculations) line_settings_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) list_to_xyz_mat() (in module open_viewmin.nematic.jones) list_to_xyzmat() (in module open_viewmin.filter_tree_plot.utilities.calculations) load() (FilterTreePlot method), [1] (FilterTreePlotQt method), [1] (NematicPlotNoQt method), [1], [2] low_val (QDoubleSpinBoxIgnoreLims attribute) M make_add_glyphs_widget() (in module open_viewmin.filter_tree_plot_Qt.menus.add_actors_widgets) make_add_surface_streamlines_widget() (in module open_viewmin.filter_tree_plot_Qt.menus.add_actors_widgets) make_add_tensor_ellipsoids_widget() (in module open_viewmin.filter_tree_plot_Qt.menus.add_actors_widgets) make_color_array_widget() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) make_geometric_objects_dict() (in module open_viewmin.filter_tree_plot.filters.glyphs) make_glyph_settings_widget() (in module open_viewmin.filter_tree_plot_Qt.menus.glyph_modify) make_label_a_color_button() (ControlsCheckboxToolBar method) make_line_settings_widget() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) make_origin_slider (SliceControlsToolBar attribute) make_sampled_mesh() (in module open_viewmin.filter_tree_plot.filters.sample) make_settings_dict() (in module open_viewmin.filter_tree_plot.settings) make_slice_slider_controls() (ActorControlToolbar method) make_smooth_contour_func() (in module open_viewmin.filter_tree_plot.filters.isosurfaces) make_special_settings_button() (ActorControlToolbar method) make_streamlines_settings_widget() (in module open_viewmin.filter_tree_plot_Qt.menus.streamlines_modify) make_sure_parent_knows_about_me() (FilterFormula method), [1] matrix_times_transpose() (in module open_viewmin.filter_tree_plot.utilities.calculations) max_re_eigval() (NematicPlotNoQt static method), [1], [2] max_slice_translate (SliceControlsToolBar attribute) max_val (ControlsSliderToolbar attribute) menu (DropdownMenu attribute) merge_all() (in module open_viewmin.filter_tree_plot.filters.topology) mesh (FilterFormula property), [1] mesh_kwargs (FilterFormula attribute), [1] mesh_label_style() (in module open_viewmin.filter_tree_plot_Qt.settings_Qt) mesh_names() (FilterTreePlot method), [1] mesh_options_button (ActorControlToolbar attribute) meshes_dict (FilterTreePlot attribute), [1] min_val (ControlsSliderToolbar attribute) module open_viewmin open_viewmin.filter_tree_plot open_viewmin.filter_tree_plot.filter_formulas open_viewmin.filter_tree_plot.filter_tree_plot open_viewmin.filter_tree_plot.filters open_viewmin.filter_tree_plot.filters.glyphs open_viewmin.filter_tree_plot.filters.isosurfaces open_viewmin.filter_tree_plot.filters.sample open_viewmin.filter_tree_plot.filters.streamlines open_viewmin.filter_tree_plot.filters.topology open_viewmin.filter_tree_plot.settings open_viewmin.filter_tree_plot.utilities open_viewmin.filter_tree_plot.utilities.calculations open_viewmin.filter_tree_plot.utilities.mpi_stitch open_viewmin.filter_tree_plot.utilities.ovm_utilities open_viewmin.filter_tree_plot.utilities.scalar_bars open_viewmin.filter_tree_plot.widget_formulas open_viewmin.filter_tree_plot.widgets open_viewmin.filter_tree_plot.widgets.box_widgets open_viewmin.filter_tree_plot.widgets.line_widgets open_viewmin.filter_tree_plot.widgets.plane_widgets open_viewmin.filter_tree_plot_Qt open_viewmin.filter_tree_plot_Qt.filter_tree_plot_Qt open_viewmin.filter_tree_plot_Qt.menus open_viewmin.filter_tree_plot_Qt.menus.add_actors_widgets open_viewmin.filter_tree_plot_Qt.menus.glyph_modify open_viewmin.filter_tree_plot_Qt.menus.main_menus open_viewmin.filter_tree_plot_Qt.menus.main_menus.add_menu open_viewmin.filter_tree_plot_Qt.menus.main_menus.calculate_menu open_viewmin.filter_tree_plot_Qt.menus.main_menus.file_menu open_viewmin.filter_tree_plot_Qt.menus.main_menus.filter_menu open_viewmin.filter_tree_plot_Qt.menus.main_menus.non_ovm_actors_toggle_menu open_viewmin.filter_tree_plot_Qt.menus.main_menus.refresh_button open_viewmin.filter_tree_plot_Qt.menus.main_menus.theme open_viewmin.filter_tree_plot_Qt.menus.main_menus.tools_menu open_viewmin.filter_tree_plot_Qt.menus.main_menus.view_menu open_viewmin.filter_tree_plot_Qt.menus.menu_utilities open_viewmin.filter_tree_plot_Qt.menus.mesh_options open_viewmin.filter_tree_plot_Qt.menus.record open_viewmin.filter_tree_plot_Qt.menus.streamlines_modify open_viewmin.filter_tree_plot_Qt.menus.visualization_options open_viewmin.filter_tree_plot_Qt.settings_Qt open_viewmin.filter_tree_plot_Qt.widgets_Qt open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls open_viewmin.filter_tree_plot_Qt.widgets_Qt.filters_tree_widgets open_viewmin.filter_tree_plot_Qt.widgets_Qt.utilities_Qt open_viewmin.nematic open_viewmin.nematic.jones open_viewmin.nematic.nematic_plot open_viewmin.nematic.nematic_plot.nematic_plot open_viewmin.nematic.nematic_plot.nematic_plot_no_qt open_viewmin.open_viewmin move_scalar_bar_to_previous_position() (in module open_viewmin.filter_tree_plot.utilities.scalar_bars) mpi_group() (in module open_viewmin.filter_tree_plot.utilities.mpi_stitch) mpi_stitch() (in module open_viewmin.filter_tree_plot.utilities.mpi_stitch) N n_and_site_types_from_open_qmin() (in module open_viewmin.nematic.jones) n_from_Q() (NematicPlotNoQt static method), [1], [2] name (ControlsCheckboxToolBar attribute) name_mesh_without_overwriting() (FilterTreePlot method), [1] name_widget_without_overwriting() (FilterTreePlot method), [1] name_without_overwriting() (in module open_viewmin.filter_tree_plot.utilities.ovm_utilities) nematic_calculations() (NematicPlotNoQt method), [1], [2] NematicPlot (class in open_viewmin) (class in open_viewmin.nematic.nematic_plot) (class in open_viewmin.nematic.nematic_plot.nematic_plot) NematicPlotNoQt (class in open_viewmin) (class in open_viewmin.nematic.nematic_plot) (class in open_viewmin.nematic.nematic_plot.nematic_plot_no_qt) new_slice_mesh() (in module open_viewmin.filter_tree_plot.widgets.plane_widgets) next_frame() (FilterTreePlot method), [1] non_filter_tree_actor_names() (FilterTreePlot method), [1] non_ovm_actors_toggle_menu (FilterTreePlotQt attribute), [1] normal (FilterFormula property), [1] num_boundaries() (NematicPlotNoQt method), [1], [2] num_centroids_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) num_divs (ControlsSliderToolbar attribute) num_frames() (FilterTreePlot method), [1] num_slider_divs (SliceControlsToolBar attribute) num_subdivisions (QDoubleSpinBoxIgnoreLims attribute) O off_screen (FilterTreePlot attribute), [1] open_about_dialog() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.file_menu) open_edit_theme_widget() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.theme) open_files_dialog() (FilterTreePlotQt method), [1] open_filter_dialog() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.filter_menu) open_filter_dialog_aux() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.filter_menu) open_viewmin module open_viewmin.filter_tree_plot module open_viewmin.filter_tree_plot.filter_formulas module open_viewmin.filter_tree_plot.filter_tree_plot module open_viewmin.filter_tree_plot.filters module open_viewmin.filter_tree_plot.filters.glyphs module open_viewmin.filter_tree_plot.filters.isosurfaces module open_viewmin.filter_tree_plot.filters.sample module open_viewmin.filter_tree_plot.filters.streamlines module open_viewmin.filter_tree_plot.filters.topology module open_viewmin.filter_tree_plot.settings module open_viewmin.filter_tree_plot.utilities module open_viewmin.filter_tree_plot.utilities.calculations module open_viewmin.filter_tree_plot.utilities.mpi_stitch module open_viewmin.filter_tree_plot.utilities.ovm_utilities module open_viewmin.filter_tree_plot.utilities.scalar_bars module open_viewmin.filter_tree_plot.widget_formulas module open_viewmin.filter_tree_plot.widgets module open_viewmin.filter_tree_plot.widgets.box_widgets module open_viewmin.filter_tree_plot.widgets.line_widgets module open_viewmin.filter_tree_plot.widgets.plane_widgets module open_viewmin.filter_tree_plot_Qt module open_viewmin.filter_tree_plot_Qt.filter_tree_plot_Qt module open_viewmin.filter_tree_plot_Qt.menus module open_viewmin.filter_tree_plot_Qt.menus.add_actors_widgets module open_viewmin.filter_tree_plot_Qt.menus.glyph_modify module open_viewmin.filter_tree_plot_Qt.menus.main_menus module open_viewmin.filter_tree_plot_Qt.menus.main_menus.add_menu module open_viewmin.filter_tree_plot_Qt.menus.main_menus.calculate_menu module open_viewmin.filter_tree_plot_Qt.menus.main_menus.file_menu module open_viewmin.filter_tree_plot_Qt.menus.main_menus.filter_menu module open_viewmin.filter_tree_plot_Qt.menus.main_menus.non_ovm_actors_toggle_menu module open_viewmin.filter_tree_plot_Qt.menus.main_menus.refresh_button module open_viewmin.filter_tree_plot_Qt.menus.main_menus.theme module open_viewmin.filter_tree_plot_Qt.menus.main_menus.tools_menu module open_viewmin.filter_tree_plot_Qt.menus.main_menus.view_menu module open_viewmin.filter_tree_plot_Qt.menus.menu_utilities module open_viewmin.filter_tree_plot_Qt.menus.mesh_options module open_viewmin.filter_tree_plot_Qt.menus.record module open_viewmin.filter_tree_plot_Qt.menus.streamlines_modify module open_viewmin.filter_tree_plot_Qt.menus.visualization_options module open_viewmin.filter_tree_plot_Qt.settings_Qt module open_viewmin.filter_tree_plot_Qt.widgets_Qt module open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls module open_viewmin.filter_tree_plot_Qt.widgets_Qt.filters_tree_widgets module open_viewmin.filter_tree_plot_Qt.widgets_Qt.utilities_Qt module open_viewmin.nematic module open_viewmin.nematic.jones module open_viewmin.nematic.nematic_plot module open_viewmin.nematic.nematic_plot.nematic_plot module open_viewmin.nematic.nematic_plot.nematic_plot_no_qt module open_viewmin.open_viewmin module options_toolbar (ControlsToolbar attribute) orbit_kwargs (FilterTreePlot attribute), [1] orbit_path (FilterTreePlot attribute), [1] organize_filenames() (FilterTreePlot static method), [1] orientations (FilterFormula property), [1] origin (FilterFormula property), [1] origin_reset_callback() (SliceControlsToolBar method) ovm_info (FilterFormula attribute), [1] oVM_theme (FilterTreePlot attribute), [1] P parent_filter_formula (FilterFormula property), [1] parent_mesh (FilterFormula property), [1] parent_mesh_name (FilterFormula attribute), [1] parent_toolbar (SliceControlsToolBar attribute) permute_axes() (in module open_viewmin.nematic.jones) pick_point_analyze_disclination() (NematicPlotNoQt method), [1], [2] play() (FilterTreePlot method), [1] plot_director_glyphs_on_circuits() (NematicPlotNoQt method), [1], [2] plotter (ActorControlToolbar attribute) (ControlsCheckboxToolBar attribute) (FilterFormula attribute), [1] (SliceControlsToolBar attribute) (WidgetFormula attribute), [1] plotter_class (in module open_viewmin.open_viewmin) points (FilterFormula property), [1] polarizer_matrix_from_angle() (in module open_viewmin.nematic.jones) pom_animation_rotate_polarizers() (in module open_viewmin.nematic.jones) pom_image_color() (in module open_viewmin.nematic.jones) pom_image_one_wavelength() (in module open_viewmin.nematic.jones) pom_image_sequence_rotate_polarizers() (in module open_viewmin.nematic.jones) populate() (ControlsCheckboxToolBar method) (DropdownMenu method) populate_mesh_options_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.mesh_options) populate_viz_options_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) post_init() (NematicPlotNoQt method), [1], [2] previous_frame() (FilterTreePlot method), [1] probe() (in module open_viewmin.filter_tree_plot.filters.sample) probe_at_picked_surface_point() (FilterTreePlot method), [1] Q q0 (NematicPlotNoQt attribute), [1], [2] Q33_from_Q5() (NematicPlotNoQt static method), [1], [2] Q_from_n() (NematicPlotNoQt static method), [1], [2] QDoubleSpinBoxIgnoreLims (class in open_viewmin.filter_tree_plot_Qt.widgets_Qt.utilities_Qt) QLabel (ControlsSliderToolbar attribute) (ControlsToolbar attribute) QSlider (ActorControlToolbar attribute) QSlider_target_type (ActorControlToolbar attribute) qslider_value() (QDoubleSpinBoxIgnoreLims method) QSliders (SliceControlsToolBar attribute) R random (FilterFormula property), [1] reader (NematicPlot attribute), [1], [2] (NematicPlotNoQt attribute), [1], [2] record_gif() (in module open_viewmin.filter_tree_plot_Qt.menus.record) record_movie() (in module open_viewmin.filter_tree_plot_Qt.menus.record) refresh() (ControlsCheckboxToolBar method) (ControlsToolbar method) (FilterTreePlot method), [1] (FilterTreePlotQt method), [1] refresh_actions (ControlsToolbar attribute) refresh_all() (ControlsCheckboxToolBar method) relink_visibility_checkbox() (ActorControlToolbar method) (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls) remove_actor_completely() (FilterTreePlotQt method), [1] remove_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) remove_child_relationship_to_all_parents() (FilterFormula method), [1] remove_colorbar() (FilterFormula method), [1] remove_menu_action() (in module open_viewmin.filter_tree_plot_Qt.menus.menu_utilities) remove_mesh_completely() (FilterTreePlot method), [1] (FilterTreePlotQt method), [1] rename_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) rename_mesh() (FilterTreePlot method), [1] (FilterTreePlotQt method), [1] rename_scalar_bar_actor_to_title() (in module open_viewmin.filter_tree_plot.utilities.scalar_bars) repopulate_non_ovm_actors_toggle_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.non_ovm_actors_toggle_menu) reset_to_initial_color() (ColorDialogValid method) rgb_to_texture() (in module open_viewmin.nematic.jones) root_ancestor (FilterFormula property), [1] rotation_matrix_2d() (in module open_viewmin.nematic.jones) rotation_transform() (in module open_viewmin.nematic.jones) rows (ControlsToolbar attribute) S safe_inverse() (in module open_viewmin.filter_tree_plot.utilities.calculations) save_html() (FilterTreePlotQt method), [1] save_jones_data() (in module open_viewmin.nematic.jones) save_jones_data_gui() (in module open_viewmin.nematic.jones) save_jones_images() (in module open_viewmin.nematic.jones) save_jones_images_gui() (in module open_viewmin.nematic.jones) save_mesh() (FilterTreePlotQt method), [1] (in module open_viewmin.filter_tree_plot_Qt.menus.mesh_options) save_meshes() (FilterTreePlot method), [1] save_meshes_launch_dialog() (FilterTreePlotQt method), [1] scalar_fields() (FilterTreePlot method), [1] set() (FilterFormula method), [1] set_accepted_callback() (FormDialog method) set_actor_visibility() (FilterTreePlot method), [1] (FilterTreePlotQt method), [1] set_background() (FilterTreePlot method), [1] set_button_text() (DropdownMenu method) set_color() (WidgetFormula method), [1] set_director() (NematicPlotNoQt method), [1], [2] set_glyph_shape() (FilterFormula method), [1] set_glyphs_scale() (FilterFormula method), [1] set_glyphs_stride() (FilterFormula method), [1] set_high_val() (QDoubleSpinBoxIgnoreLims method) set_icon_size() (ControlsToolbar method) set_label() (ActorControlToolbar method) (ControlsToolbar method) set_lights_intensity() (FilterTreePlot method), [1] set_lights_intensity_from_slider() (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls) set_low_val() (QDoubleSpinBoxIgnoreLims method) set_opacity_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) set_orbit() (FilterTreePlot method), [1] set_orbit_dlg() (FilterTreePlotQt method), [1] set_orbit_kwargs() (FilterTreePlot method), [1] set_outline_visibility() (WidgetFormula method), [1] set_q0() (NematicPlotNoQt method), [1], [2] set_qtensor() (NematicPlotNoQt method), [1], [2] set_rejected_callback() (FormDialog method) set_value_from_qslider() (QDoubleSpinBoxIgnoreLims method) settings (FilterTreePlot attribute), [1] settings_Qt_dict (FilterTreePlotQt attribute), [1] (in module open_viewmin.filter_tree_plot_Qt) (in module open_viewmin.filter_tree_plot_Qt.settings_Qt) setup_add_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus) (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.add_menu) setup_animation_buttons() (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls) setup_boundaries() (NematicPlotNoQt method), [1], [2] setup_calculate_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus) (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.calculate_menu) setup_defects() (NematicPlot method), [1], [2] (NematicPlotNoQt method), [1], [2] setup_director() (NematicPlot method), [1], [2] (NematicPlotNoQt method), [1], [2] setup_enable_fly_to_right_click_action() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.tools_menu) setup_enable_picking_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.tools_menu) setup_file_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus) (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.file_menu) setup_filter_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus) (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.filter_menu) setup_interaction_style_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.tools_menu) setup_lighting_control() (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls) setup_line_widget() (in module open_viewmin.filter_tree_plot.widgets.line_widgets) setup_main_menus() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus) setup_non_ovm_actors_toggle() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus) (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.non_ovm_actors_toggle_menu) setup_orient_along_axes_buttons() (SliceControlsToolBar method) setup_record_toolbar() (in module open_viewmin.filter_tree_plot_Qt.menus.record) setup_refresh_button() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus) (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.refresh_button) setup_slice_control() (SliceControlsToolBar method) setup_slice_widget() (in module open_viewmin.filter_tree_plot.widgets.plane_widgets) setup_theme_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus) (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.theme) setup_tools_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus) (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.tools_menu) setup_view_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus) (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.view_menu) setup_widget_control() (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls) show() (FormDialog method) show_editor() (FilterTreePlotQt method), [1] show_jones() (NematicPlot method), [1], [2] (NematicPlotNoQt method), [1], [2] show_orbit() (FilterTreePlot method), [1] slice_control_toolbar (SliceControlsToolBar attribute) slice_controls (ActorControlToolbar attribute) slice_origin_slider_value_changed_callback() (SliceControlsToolBar method) slice_phi_slider_formula() (SliceControlsToolBar method) slice_phi_slider_inv_formula() (SliceControlsToolBar method) slice_phi_slider_value_changed_callback() (SliceControlsToolBar method) slice_theta_slider_formula() (SliceControlsToolBar method) slice_theta_slider_inv_formula() (SliceControlsToolBar method) slice_theta_slider_value_changed_callback() (SliceControlsToolBar method) slice_value_changed_callback() (SliceControlsToolBar method) slice_widget_callback() (in module open_viewmin.filter_tree_plot.widgets.plane_widgets) SliceControlsToolBar (class in open_viewmin.filter_tree_plot_Qt.widgets_Qt.controls) slider (ControlsSliderToolbar attribute) slider_formula() (ControlsSliderToolbar method) slider_toolbar (ActorControlToolbar attribute) sort_filenames_by_timestamp() (in module open_viewmin.filter_tree_plot.utilities.ovm_utilities) spinbox_callback() (ControlsSliderToolbar method) standardize_scalar_bar() (in module open_viewmin.filter_tree_plot.utilities.scalar_bars) state_changed_callback (ControlsCheckboxToolBar attribute) streamlines_settings_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) string_to_filter() (FilterFormula static method), [1] symbol (SliceControlsToolBar attribute) symmetric_tensor_fields() (FilterTreePlot method), [1] T tensor_ellipsoids_settings_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) tensor_fields() (FilterTreePlot method), [1] the_Add_menu (FilterTreePlotQt attribute), [1] the_File_menu (FilterTreePlotQt attribute), [1] the_refresh_toolbar (FilterTreePlotQt attribute), [1] the_Tools_menu (FilterTreePlotQt attribute), [1] the_View_menu (FilterTreePlotQt attribute), [1] theme_menu (FilterTreePlotQt attribute), [1] threshold_slider_callback() (ActorControlToolbar method) title (FilterTreePlot attribute), [1] toggle_actor_visibility() (FilterTreePlot static method), [1] toggle_colorbar_callback() (in module open_viewmin.filter_tree_plot_Qt.menus.visualization_options) toggle_eye_dome_lighting() (FilterTreePlot method), [1] toggle_filter_tree_actor_visibility() (FilterTreePlot method), [1] toggle_floor() (FilterTreePlot method), [1] toggle_last_colorbar() (FilterTreePlot method), [1] toggle_orbit_visibility() (FilterTreePlot method), [1] toggle_scalar_bar_visibility() (FilterTreePlot method), [1] toggle_shadows() (FilterTreePlot method), [1] toggle_stereo_render() (FilterTreePlot method), [1] toolbars (FilterTreePlotQt attribute), [1] transpose_times_matrix() (in module open_viewmin.filter_tree_plot.utilities.calculations) U UCMerced_theme (in module open_viewmin.filter_tree_plot.settings) unique_array_names() (FilterTreePlot method), [1] update() (FilterFormula method), [1] (WidgetFormula method), [1] update_actor() (FilterFormula method), [1] (FilterTreePlot method), [1] (FilterTreePlotQt method), [1] update_children() (FilterFormula method), [1] update_filter() (FilterTreePlot method), [1] (FilterTreePlotQt method), [1] update_filter_menu() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.filter_menu) update_filters_tree() (FilterTreePlotQt method), [1] (in module open_viewmin.filter_tree_plot_Qt.widgets_Qt.filters_tree_widgets) update_frame_spinbox() (FilterTreePlotQt method), [1] update_isosurface() (in module open_viewmin.filter_tree_plot.filters.isosurfaces) update_method (ControlsSliderToolbar attribute) update_scalar_bar() (in module open_viewmin.filter_tree_plot.utilities.scalar_bars) update_single_step() (QDoubleSpinBoxIgnoreLims method) V value_change_method() (ControlsSliderToolbar method) vector_fields() (FilterTreePlot method), [1] view_frame() (FilterTreePlot method), [1] (FilterTreePlotQt method), [1] visibility_checkbox (ActorControlToolbar attribute) visualization_options_button (ActorControlToolbar attribute) W whether_toggle_menu_enabled() (in module open_viewmin.filter_tree_plot_Qt.menus.main_menus.non_ovm_actors_toggle_menu) widget (SliceControlsToolBar attribute) (WidgetFormula property), [1] widget_formula (SliceControlsToolBar property) widget_formulas (FilterTreePlot attribute), [1] widget_kwargs (WidgetFormula attribute), [1] widget_name (FilterFormula attribute), [1] (SliceControlsToolBar attribute) WidgetFormula (class in open_viewmin) (class in open_viewmin.filter_tree_plot.widget_formulas) widgets (FilterTreePlot attribute), [1] wiggle_slider_to_update() (ActorControlToolbar method) (ControlsSliderToolbar method) window_size (FilterTreePlotQt attribute), [1] X xyz_arrays (NematicPlotNoQt attribute), [1], [2] xyzmat_to_list() (in module open_viewmin.filter_tree_plot.utilities.calculations)